Semantic Segmentation of Neuronal Bodies in Fluorescence Microscopy Using a 2D+3D CNN Training Strategy with Sparsely Annotated Data

no code implementations • 31 Aug 2020 • Filippo Maria Castelli, Matteo Roffilli, Giacomo Mazzamuto, Irene Costantini, Ludovico Silvestri, Francesco Saverio Pavone

Semantic segmentation of neuronal structures in 3D high-resolution fluorescence microscopy imaging of the human brain cortex can take advantage of bidimensional CNNs, which yield good results in neuron localization but lead to inaccurate surface reconstruction.

Missing Labels Semantic Segmentation +1