Fast whole-brain imaging of seizures in zebrafish larvae by two-photon light-sheet microscopy

no code implementations • 17 Dec 2020 • Giuseppe de Vito, Lapo Turrini, Caroline Müllenbroich, Pietro Ricci, Giuseppe Sancataldo, Giacomo Mazzamuto, Natascia Tiso, Leonardo Sacconi, Duccio Fanelli, Ludovico Silvestri, Francesco Vanzi, Francesco Saverio Pavone

Light-sheet fluorescence microscopy (LSFM) enables real-time whole-brain functional imaging in zebrafish larvae.

Semantic Segmentation of Neuronal Bodies in Fluorescence Microscopy Using a 2D+3D CNN Training Strategy with Sparsely Annotated Data

no code implementations • 31 Aug 2020 • Filippo Maria Castelli, Matteo Roffilli, Giacomo Mazzamuto, Irene Costantini, Ludovico Silvestri, Francesco Saverio Pavone

Semantic segmentation of neuronal structures in 3D high-resolution fluorescence microscopy imaging of the human brain cortex can take advantage of bidimensional CNNs, which yield good results in neuron localization but lead to inaccurate surface reconstruction.

Missing Labels Semantic Segmentation +1

Cell identification in whole-brain multiview images of neural activation

1 code implementation • 4 Nov 2015 • Marco Paciscopi, Ludovico Silvestri, Francesco Saverio Pavone, Paolo Frasconi

We present a scalable method for brain cell identification in multiview confocal light sheet microscopy images.