Search Results for author: Johannes C. B. Dietschreit

Found 4 papers, 2 papers with code

Enhanced sampling of robust molecular datasets with uncertainty-based collective variables

no code implementations6 Feb 2024 Aik Rui Tan, Johannes C. B. Dietschreit, Rafael Gomez-Bombarelli

Generating a data set that is representative of the accessible configuration space of a molecular system is crucial for the robustness of machine learned interatomic potentials (MLIP).

Active Learning

Learning Collective Variables with Synthetic Data Augmentation through Physics-inspired Geodesic Interpolation

no code implementations2 Feb 2024 Soojung Yang, Juno Nam, Johannes C. B. Dietschreit, Rafael Gómez-Bombarelli

In molecular dynamics simulations, rare events, such as protein folding, are typically studied using enhanced sampling techniques, most of which are based on the definition of a collective variable (CV) along which acceleration occurs.

Data Augmentation Protein Folding

Differentiable Simulations for Enhanced Sampling of Rare Events

1 code implementation9 Jan 2023 Martin Šípka, Johannes C. B. Dietschreit, Lukáš Grajciar, Rafael Gómez-Bombarelli

Simulating rare events, such as the transformation of a reactant into a product in a chemical reaction typically requires enhanced sampling techniques that rely on heuristically chosen collective variables (CVs).

Cannot find the paper you are looking for? You can Submit a new open access paper.