no code implementations • 6 Feb 2024 • Aik Rui Tan, Johannes C. B. Dietschreit, Rafael Gomez-Bombarelli
Generating a data set that is representative of the accessible configuration space of a molecular system is crucial for the robustness of machine learned interatomic potentials (MLIP).
no code implementations • 2 Feb 2024 • Soojung Yang, Juno Nam, Johannes C. B. Dietschreit, Rafael Gómez-Bombarelli
In molecular dynamics simulations, rare events, such as protein folding, are typically studied using enhanced sampling techniques, most of which are based on the definition of a collective variable (CV) along which acceleration occurs.
1 code implementation • 2 May 2023 • Aik Rui Tan, Shingo Urata, Samuel Goldman, Johannes C. B. Dietschreit, Rafael Gómez-Bombarelli
In this work, we examine multiple UQ schemes for improving the robustness of NN interatomic potentials (NNIPs) through active learning.
1 code implementation • 9 Jan 2023 • Martin Šípka, Johannes C. B. Dietschreit, Lukáš Grajciar, Rafael Gómez-Bombarelli
Simulating rare events, such as the transformation of a reactant into a product in a chemical reaction typically requires enhanced sampling techniques that rely on heuristically chosen collective variables (CVs).