no code implementations • 30 Apr 2024 • Michael Rabenberg, Carter Benson, Federico Donato, Yongqun He, Anthony Huffman, Shane Babcock, John Beverley
By way of supplement, we propose definitions for grounding relations holding between qualities and dispositions, and dispositions and roles, illustrating our proposal by representing subtle aspects of host-pathogen interactions.
no code implementations • 30 Apr 2024 • John Beverley, Robin McGill, Sam Smith, Jie Zheng, Giacomo De Colle, Finn Wilson, Matthew Diller, William D. Duncan, William R. Hogan, Yongqun He
The term credential encompasses educational certificates, degrees, certifications, and government-issued licenses.
no code implementations • 30 Mar 2023 • Hasin Rehana, Nur Bengisu Çam, Mert Basmaci, Jie Zheng, Christianah Jemiyo, Yongqun He, Arzucan Özgür, Junguk Hur
It achieved a precision of 88. 37%, a recall of 85. 14%, and an F1-score of 86. 49% on the LLL dataset.
no code implementations • 20 Oct 2021 • Sijia Liu, Andrew Wen, LiWei Wang, Huan He, Sunyang Fu, Robert Miller, Andrew Williams, Daniel Harris, Ramakanth Kavuluru, Mei Liu, Noor Abu-el-rub, Dalton Schutte, Rui Zhang, Masoud Rouhizadeh, John D. Osborne, Yongqun He, Umit Topaloglu, Stephanie S Hong, Joel H Saltz, Thomas Schaffter, Emily Pfaff, Christopher G. Chute, Tim Duong, Melissa A. Haendel, Rafael Fuentes, Peter Szolovits, Hua Xu, Hongfang Liu, Natural Language Processing, Subgroup, National COVID Cohort Collaborative
Although we use COVID-19 as a use case in this effort, our framework is general enough to be applied to other domains of interest in clinical NLP.
no code implementations • 5 Aug 2020 • Yang Wang, Fengwei Zhang, Hong Yu, Xianwei Ye, Yongqun He
The commonly occurring 17 phenotypes were classified into different groups based on the Human Phenotype Ontology (HPO).
1 code implementation • 31 May 2020 • Hong Yu, Li Li, Hsin-hui Huang, Yang Wang, Yingtong Liu, Edison Ong, Anthony Huffman, Tao Zeng, Jingsong Zhang, Pengpai Li, Zhiping Liu, Xiangyan Zhang, Xianwei Ye, Samuel K. Handelman, Gerry Higgins, Gilbert S. Omenn, Brian Athey, Junguk Hur, Luonan Chen, Yongqun He
We hypothesized that ontology can be used as an integrative platform to classify and analyze HCI and disease outcomes.
Other Quantitative Biology
no code implementations • 2 Aug 2019 • Ying Yang, Michael Wybrow, Yuan-Fang Li, Tobias Czauderna, Yongqun He
Ontologies are formal representations of concepts and complex relationships among them.
no code implementations • 14 Nov 2013 • Yongqun He, Zoushuang Xiang
The interactors (e. g., a protein), interactions, and pathways in these data resources are often represented as instances in using BioPAX, a standard pathway data exchange format.