Search Results for author:
Found 8 papers, 1 papers with code
Grounding Realizable Entities
By way of supplement, we propose definitions for grounding relations holding between qualities and dispositions, and dispositions and roles, illustrating our proposal by representing subtle aspects of host-pathogen interactions.
Credentials in the Occupation Ontology
The term credential encompasses educational certificates, degrees, certifications, and government-issued licenses.
Evaluation of GPT and BERT-based models on identifying protein-protein interactions in biomedical text
It achieved a precision of 88. 37%, a recall of 85. 14%, and an F1-score of 86. 49% on the LLL dataset.
An Open Natural Language Processing Development Framework for EHR-based Clinical Research: A case demonstration using the National COVID Cohort Collaborative (N3C)
Although we use COVID-19 as a use case in this effort, our framework is general enough to be applied to other domains of interest in clinical NLP.
Ontology-based annotation and analysis of COVID-19 phenotypes
The commonly occurring 17 phenotypes were classified into different groups based on the Human Phenotype Ontology (HPO).
Ontology-based systematic classification and analysis of coronaviruses, hosts, and host-coronavirus interactions towards deep understanding of COVID-19
We hypothesized that ontology can be used as an integrative platform to classify and analyze HCI and disease outcomes.
Other Quantitative Biology
OntoPlot: A Novel Visualisation for Non-hierarchical Associations in Large Ontologies
Ontologies are formal representations of concepts and complex relationships among them.
HINO: a BFO-aligned ontology representing human molecular interactions and pathways
The interactors (e. g., a protein), interactions, and pathways in these data resources are often represented as instances in using BioPAX, a standard pathway data exchange format.
