1 code implementation • 12 Dec 2022 • Leibo Liu, Oscar Perez-Concha, Anthony Nguyen, Vicki Bennett, Louisa Jorm
XR-Transformer, the new SOTA model in the general extreme multi-label text classification domain, and XR-LAT, a novel adaptation of the XR-Transformer model, were also trained on the MIMIC-III dataset.
Multi Label Text Classification Multi-Label Text Classification +1
1 code implementation • 22 Apr 2022 • Leibo Liu, Oscar Perez-Concha, Anthony Nguyen, Vicki Bennett, Louisa Jorm
In this study, we propose a hierarchical label-wise attention Transformer model (HiLAT) for the explainable prediction of ICD codes from clinical documents.
no code implementations • 1 Jan 2021 • Leibo Liu, Oscar Perez-Concha, Anthony Nguyen, Vicki Bennett, Louisa Jorm
Our end-to-end de-identification framework consists of three components: 1) Annotation: labelling of PII in the 600 hospital discharge summaries using five pre-defined categories: person, address, date of birth, individual identification number, phone/fax number; 2) Modelling: training six named entity recognition (NER) deep learning base-models on balanced and imbalanced datasets; and evaluating ensembles that combine all six base-models, the three base-models with the best F1 scores and the three base-models with the best recall scores respectively, using token-level majority voting and stacking methods; and 3) De-identification: removing PII from the hospital discharge summaries.