no code implementations • 17 Oct 2023 • Rudolf L. M. van Herten, Nils Hampe, Richard A. P. Takx, Klaas Jan Franssen, Yining Wang, Dominika Suchá, José P. Henriques, Tim Leiner, R. Nils Planken, Ivana Išgum
This requires analysis of the coronary lumen and plaque.
no code implementations • 15 Sep 2022 • Wouter A. C. van Amsterdam, Pim A. de Jong, Joost J. C. Verhoeff, Tim Leiner, Rajesh Ranganath
In cancer research there is much interest in building and validating outcome predicting outcomes to support treatment decisions.
no code implementations • 23 Dec 2021 • Yutong Chen, Carola-Bibiane Schönlieb, Pietro Liò, Tim Leiner, Pier Luigi Dragotti, Ge Wang, Daniel Rueckert, David Firmin, Guang Yang
Compressed sensing (CS) has been playing a key role in accelerating the magnetic resonance imaging (MRI) acquisition process.
no code implementations • 10 Aug 2020 • Steffen Bruns, Jelmer M. Wolterink, Richard A. P. Takx, Robbert W. van Hamersvelt, Dominika Suchá, Max A. Viergever, Tim Leiner, Ivana Išgum
Deep learning-based whole-heart segmentation in coronary CT angiography (CCTA) allows the extraction of quantitative imaging measures for cardiovascular risk prediction.
no code implementations • 10 Jul 2020 • Julia M. H. Noothout, Bob D. de Vos, Jelmer M. Wolterink, Elbrich M. Postma, Paul A. M. Smeets, Richard A. P. Takx, Tim Leiner, Max A. Viergever, Ivana Išgum
Global landmark locations are obtained by averaging the predicted displacement vectors, where the contribution of each displacement vector is weighted by the posterior classification probability of the patch that it is pointing from.
no code implementations • 10 Nov 2019 • Majd Zreik, Tim Leiner, Nadieh Khalili, Robbert W. van Hamersvelt, Jelmer M. Wolterink, Michiel Voskuil, Max A. Viergever, Ivana Išgum
We combine our previous works for the analysis of the complete coronary artery tree and the LV myocardium: Coronary arteries are encoded by two disjoint convolutional autoencoders (CAEs) and the LV myocardium is characterized by a convolutional neural network (CNN) and a CAE.
no code implementations • 14 Aug 2019 • Jelmer M. Wolterink, Tim Leiner, Ivana Išgum
In this work, we propose to use graph convolutional networks (GCNs) to predict the spatial location of vertices in a tubular surface mesh that segments the coronary artery lumen.
no code implementations • 11 Jun 2019 • Majd Zreik, Robbert W. van Hamersvelt, Nadieh Khalili, Jelmer M. Wolterink, Michiel Voskuil, Max A. Viergever, Tim Leiner, Ivana Išgum
In patients with obstructive coronary artery disease, the functional significance of a coronary artery stenosis needs to be determined to guide treatment.
no code implementations • 12 Feb 2019 • Bob D. de Vos, Jelmer M. Wolterink, Tim Leiner, Pim A. de Jong, Nikolas Lessmann, Ivana Isgum
To meet demands of the increasing interest in quantification of CAC, i. e. coronary calcium scoring, especially as an unrequested finding for screening and research, automatic methods have been proposed.
no code implementations • 7 Oct 2018 • Jelmer M. Wolterink, Robbert W. van Hamersvelt, Max A. Viergever, Tim Leiner, Ivana Išgum
Evaluation using 24 test images of the CAT08 challenge showed that extracted centerlines had an average overlap of 93. 7% with 96 manually annotated reference centerlines.
no code implementations • 27 Sep 2018 • Steffen Bruns, Jelmer M. Wolterink, Robbert W. van Hamersvelt, Majd Zreik, Tim Leiner, Ivana Išgum
We propose augmentation of the training data with virtual mono-energetic reconstructions from a spectral CT scanner which show different attenuation levels of the contrast agent.
no code implementations • 13 Apr 2018 • Julia M. H. Noothout, Bob D. de Vos, Jelmer M. Wolterink, Tim Leiner, Ivana Išgum
Under the assumption that patches close to a landmark can determine the landmark location more precisely than patches farther from it, only those patches that contain the landmark according to classification are used to determine the landmark location.
no code implementations • 12 Apr 2018 • Jelmer M. Wolterink, Tim Leiner, Ivana Isgum
Results show that Wasserstein generative adversarial networks can be used to synthesize blood vessel geometries.
no code implementations • 12 Apr 2018 • Majd Zreik, Robbert W. van Hamersvelt, Jelmer M. Wolterink, Tim Leiner, Max A. Viergever, Ivana Isgum
The results demonstrate that automatic detection and classification of coronary artery plaque and stenosis are feasible.
no code implementations • 24 Nov 2017 • Majd Zreik, Nikolas Lessmann, Robbert W. van Hamersvelt, Jelmer M. Wolterink, Michiel Voskuil, Max A. Viergever, Tim Leiner, Ivana Išgum
To identify patients with a functionally significant coronary artery stenosis, analysis is performed in several stages.
no code implementations • 3 Aug 2017 • Jelmer M. Wolterink, Tim Leiner, Max A. Viergever, Ivana Isgum
We propose a fully automatic method for segmentation and disease classification using cardiac cine MR images.
no code implementations • 19 Apr 2017 • Majd Zreik, Tim Leiner, Bob D. de Vos, Robbert W. van Hamersvelt, Max A. Viergever, Ivana Isgum
Subsequently, to obtain the segmentation of the LV, voxel classification is performed within the defined bounding box using a CNN.
no code implementations • 19 Apr 2017 • Bob D. de Vos, Jelmer M. Wolterink, Pim A. de Jong, Tim Leiner, Max A. Viergever, Ivana Išgum
We propose a method for automatic localization of one or more anatomical structures in 3D medical images through detection of their presence in 2D image slices using a convolutional neural network (ConvNet).
no code implementations • 12 Apr 2017 • Jelmer M. Wolterink, Tim Leiner, Max A. Viergever, Ivana Išgum
Ten training and ten test CMR scans cropped to an ROI around the heart were provided in the MICCAI 2016 HVSMR challenge.
no code implementations • 11 Apr 2017 • Pim Moeskops, Jelmer M. Wolterink, Bas H. M. van der Velden, Kenneth G. A. Gilhuijs, Tim Leiner, Max A. Viergever, Ivana Išgum
The CNN therefore learns to identify the imaging modality, the visualised anatomical structures, and the tissue classes.