no code implementations • 13 Nov 2023 • Yuming Jiang, Devasahayam Arokia Balaya Rex, Dina Schuster, Benjamin A. Neely, Germán L. Rosano, Norbert Volkmar, Amanda Momenzadeh, Trenton M. Peters-Clarke, Susan B. Egbert, Simion Kreimer, Emma H. Doud, Oliver M. Crook, Amit Kumar Yadav, Muralidharan Vanuopadath, Martín L. Mayta, Anna G. Duboff, Nicholas M. Riley, Robert L. Moritz, Jesse G. Meyer
We expect this work to serve as a basic resource for new practitioners in the field of shotgun or bottom-up proteomics.
no code implementations • 24 Nov 2021 • Igor M. Soares, Fernando H. F. Camargo, Adriano Marques, Oliver M. Crook
We also demonstrate that we can perform few-shot-learning and obtain $76\%$ top-10 accuracy using only $10\%$ of the sequences.
1 code implementation • 14 Oct 2021 • Oliver M. Crook, Kelsey Lane Warmbrod, Greg Lipstein, Christine Chung, Christopher W. Bakerlee, T. Greg McKelvey Jr., Shelly R. Holland, Jacob L. Swett, Kevin M. Esvelt, Ethan C. Alley, William J. Bradshaw
The ability to identify the designer of engineered biological sequences -- termed genetic engineering attribution (GEA) -- would help ensure due credit for biotechnological innovation, while holding designers accountable to the communities they affect.
no code implementations • 23 Sep 2020 • Oliver M. Crook, Mihai Cucuringu, Tim Hurst, Carola-Bibiane Schönlieb, Matthew Thorpe, Konstantinos C. Zygalakis
The transportation $\mathrm{L}^p$ distance, denoted $\mathrm{TL}^p$, has been proposed as a generalisation of Wasserstein $\mathrm{W}^p$ distances motivated by the property that it can be applied directly to colour or multi-channelled images, as well as multivariate time-series without normalisation or mass constraints.
no code implementations • 23 Sep 2019 • Oliver M. Crook, Tim Hurst, Carola-Bibiane Schönlieb, Matthew Thorpe, Konstantinos C. Zygalakis
In this paper we extend the labels by minimising the constrained discrete $p$-Dirichlet energy.