Search Results for author: Nicholas Youngblut

Found 2 papers, 1 papers with code

Whole Genome Transformer for Gene Interaction Effects in Microbiome Habitat Specificity

no code implementations9 May 2024 Zhufeng Li, Sandeep S Cranganore, Nicholas Youngblut, Niki Kilbertus

Leveraging the vast genetic diversity within microbiomes offers unparalleled insights into complex phenotypes, yet the task of accurately predicting and understanding such traits from genomic data remains challenging.

Specificity

GeNet: Deep Representations for Metagenomics

5 code implementations30 Jan 2019 Mateo Rojas-Carulla, Ilya Tolstikhin, Guillermo Luque, Nicholas Youngblut, Ruth Ley, Bernhard Schölkopf

We introduce GeNet, a method for shotgun metagenomic classification from raw DNA sequences that exploits the known hierarchical structure between labels for training.

General Classification

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