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Found 2 papers, 1 papers with code
VaiPhy: a Variational Inference Based Algorithm for Phylogeny
The exponential size of the tree space is, unfortunately, a substantial obstacle for Bayesian phylogenetic inference using Markov chain Monte Carlo based methods since these rely on local operations.
Towards interpretability of Mixtures of Hidden Markov Models
Mixtures of Hidden Markov Models (MHMMs) are frequently used for clustering of sequential data.
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