TrajPy: empowering feature engineering for trajectory analysis across domains

1 code implementation • 22 Aug 2023 • Maurício Moreira-Soares, Eduardo Mossmann, Rui D. M. Travasso, José Rafael Bordin

The TrajPy package was developed in Python 3 and released under the GNU GPL-3 license.

Feature Engineering

Adhesion modulates cell morphology and migration within dense fibrous networks

1 code implementation • Journal of Physics: Condensed Matter 2020 • Maurício Moreira-Soares, Susana P. Cunha, José Rafael Bordin, Rui D. M. Travasso

With this purpose we have measured in our simulation the cell's velocity and quantified its morphology as a function of the fibre density and of its adhesiveness to the matrix fibres.

Angiogenic Factors produced by Hypoxic Cells are a leading driver of Anastomoses in Sprouting Angiogenesis---a computational study

1 code implementation • 12 Jun 2018 • Maurício Moreira-Soares, Rita Coimbra, Luís Rebelo, João Carvalho, Rui D. M. Travasso

We demonstrate that this increased production of angiogenic factors by hypoxic cells is able to promote vessel anastomoses events in both 2D and 3D.

Biological Physics Soft Condensed Matter Tissues and Organs

Angiogenic Factors produced by Hypoxic Cells are a leading driver of Anastomoses in Sprouting Angiogenesis–a computational study

1 code implementation • Scientific Reports 2018 • Maurício Moreira-Soares, Rita Coimbra, Luís Rebelo, João Carvalho, Rui D. M. Travasso

We demonstrate that this increased production of angiogenic factors by hypoxic cells is able to promote vessel anastomoses events in both 2D and 3D.