Search Results for author: Julian Suk

Found 7 papers, 5 papers with code

LaB-GATr: geometric algebra transformers for large biomedical surface and volume meshes

no code implementations12 Mar 2024 Julian Suk, Baris Imre, Jelmer M. Wolterink

We propose LaB-GATr, a transfomer neural network with geometric tokenisation that can effectively learn with large-scale (bio-)medical surface and volume meshes through sequence compression and interpolation.

SIRE: scale-invariant, rotation-equivariant estimation of artery orientations using graph neural networks

no code implementations9 Nov 2023 Dieuwertje Alblas, Julian Suk, Christoph Brune, Kak Khee Yeung, Jelmer M. Wolterink

Hence, SIRE can be trained with arbitrarily oriented vessels with varying radii to generalise to vessels with a wide range of calibres and tortuosity.

Generative modeling of living cells with SO(3)-equivariant implicit neural representations

1 code implementation18 Apr 2023 David Wiesner, Julian Suk, Sven Dummer, Tereza Nečasová, Vladimír Ulman, David Svoboda, Jelmer M. Wolterink

Finally, we show how microscopy images of living cells that correspond to our generated cell shapes can be synthesized using an image-to-image model.

Cell Tracking

SE(3) symmetry lets graph neural networks learn arterial velocity estimation from small datasets

1 code implementation17 Feb 2023 Julian Suk, Christoph Brune, Jelmer M. Wolterink

We demonstrate how to construct an SE(3)-equivariant GNN that is independent of the spatial orientation of the input mesh and show how this reduces the necessary amount of training data compared to a baseline neural network.

Mesh Neural Networks for SE(3)-Equivariant Hemodynamics Estimation on the Artery Wall

1 code implementation9 Dec 2022 Julian Suk, Pim de Haan, Phillip Lippe, Christoph Brune, Jelmer M. Wolterink

Computational fluid dynamics (CFD) is a valuable asset for patient-specific cardiovascular-disease diagnosis and prognosis, but its high computational demands hamper its adoption in practice.

Mesh convolutional neural networks for wall shear stress estimation in 3D artery models

1 code implementation10 Sep 2021 Julian Suk, Pim de Haan, Phillip Lippe, Christoph Brune, Jelmer M. Wolterink

In this work, we propose to instead use mesh convolutional neural networks that directly operate on the same finite-element surface mesh as used in CFD.

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