Search Results for author: Jeffrey J. Gray

Found 4 papers, 1 papers with code

Deciphering antibody affinity maturation with language models and weakly supervised learning

no code implementations14 Dec 2021 Jeffrey A. Ruffolo, Jeffrey J. Gray, Jeremias Sulam

Understanding the composition of an individual's immune repertoire can provide insights into this process and reveal potential therapeutic antibodies.

Language Modelling Multiple Instance Learning +1

Improved antibody structure prediction by deep learning of side chain conformations

1 code implementation bioRxiv 2021 Deniz Akpinaroglu, Jeffrey A. Ruffolo, Sai Pooja Mahajan, Jeffrey J. Gray

When compared to alternative rotamer repacking methods, which require an input backbone structure, DeepSCAb predicts side chain conformations competitively.

Drug Discovery

Advances to tackle backbone flexibility in protein docking

no code implementations15 Oct 2020 Ameya Harmalkar, Jeffrey J. Gray

Computational docking methods can provide structural models of protein-protein complexes, but protein backbone flexibility upon association often thwarts accurate predictions.

Biomolecules

Deep Learning in Protein Structural Modeling and Design

no code implementations16 Jul 2020 Wenhao Gao, Sai Pooja Mahajan, Jeremias Sulam, Jeffrey J. Gray

Deep learning is catalyzing a scientific revolution fueled by big data, accessible toolkits, and powerful computational resources, impacting many fields including protein structural modeling.

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