no code implementations • 29 Sep 2021 • Meihong Pan, Chunqiu Xia, Hongyi Xin, Yang Yang, Xiaoyong Pan, Hong-Bin Shen
Such approach could lead to information imbalance between support and query samples, which confounds model generalization from support to query samples.
1 code implementation • 2 Nov 2017 • Jeremie S. Kim, Damla Senol Cali, Hongyi Xin, Donghyuk Lee, Saugata Ghose, Mohammed Alser, Hasan Hassan, Oguz Ergin, Can Alkan, Onur Mutlu
State-of-the-art read mappers 1) quickly generate possible mapping locations for seeds (i. e., smaller segments) within each read, 2) extract reference sequences at each of the mapping locations, and 3) check similarity between each read and its associated reference sequences with a computationally-expensive algorithm (i. e., sequence alignment) to determine the origin of the read.
1 code implementation • 6 Apr 2016 • Mohammed Alser, Hasan Hassan, Hongyi Xin, Oğuz Ergin, Onur Mutlu, Can Alkan
The addition of GateKeeper as a pre-alignment step can reduce the verification time of the mrFAST mapper by a factor of 10.