no code implementations • SMM4H (COLING) 2022 • Imane Guellil, Jinge Wu, Honghan Wu, Tony Sun, Beatrice Alex
Our team participated in the tasks related to the Identification of Adverse Drug Events (ADEs), the classification of change in medication (change-med) and the classification of self-report of vaccination (self-vaccine).
no code implementations • 3 Apr 2024 • Yunsoo Kim, Jinge Wu, Yusuf Abdulle, Yue Gao, Honghan Wu
This work proposes a novel approach to enhance human-computer interaction in chest X-ray analysis using Vision-Language Models (VLMs) enhanced with radiologists' attention by incorporating eye gaze data alongside textual prompts.
1 code implementation • 11 Jan 2024 • Jinge Wu, Yunsoo Kim, Honghan Wu
The recent success of large language and vision models (LLVMs) on vision question answering (VQA), particularly their applications in medicine (Med-VQA), has shown a great potential of realizing effective visual assistants for healthcare.
no code implementations • 20 Dec 2023 • Jinge Wu, Yunsoo Kim, Eva C. Keller, Jamie Chow, Adam P. Levine, Nikolas Pontikos, Zina Ibrahim, Paul Taylor, Michelle C. Williams, Honghan Wu
This paper proposes one of the first clinical applications of multimodal large language models (LLMs) as an assistant for radiologists to check errors in their reports.
no code implementations • 20 Dec 2023 • Emily Groves, Minhong Wang, Yusuf Abdulle, Holger Kunz, Jason Hoelscher-Obermaier, Ronin Wu, Honghan Wu
Five setups were designed to assess ML and FT model performance across different data availability scenarios. Datasets for curation tasks included: task 1 (620, 386), task 2 (611, 430), and task 3 (617, 381), maintaining a 50:50 positive versus negative ratio.
no code implementations • 24 Aug 2022 • Jinge Wu, Rowena Smith, Honghan Wu
Adverse Childhood Experiences (ACEs) are defined as a collection of highly stressful, and potentially traumatic, events or circumstances that occur throughout childhood and/or adolescence.
no code implementations • 24 Aug 2022 • Jinge Wu, Rowena Smith, Honghan Wu
In this paper, we present an ontology-driven self-supervised approach (derive concept embeddings using an auto-encoder from baseline NLP results) for producing a publicly available resource that would support large-scale machine learning (e. g., training transformer based large language models) on social media corpus.
1 code implementation • 11 May 2022 • Hang Dong, Víctor Suárez-Paniagua, Huayu Zhang, Minhong Wang, Arlene Casey, Emma Davidson, Jiaoyan Chen, Beatrice Alex, William Whiteley, Honghan Wu
Computational text phenotyping is the practice of identifying patients with certain disorders and traits from clinical notes.
1 code implementation • 24 Apr 2022 • Honghan Wu, Minhong Wang, Aneeta Sylolypavan, Sarah Wild
Extensive analyses were carried out to quantify health inequalities (a) embedded in two real-world ICU datasets; (b) induced by AI models trained for two resource allocation scenarios.
no code implementations • 20 Apr 2022 • Qingyu Chen, Alexis Allot, Robert Leaman, Rezarta Islamaj Doğan, Jingcheng Du, Li Fang, Kai Wang, Shuo Xu, Yuefu Zhang, Parsa Bagherzadeh, Sabine Bergler, Aakash Bhatnagar, Nidhir Bhavsar, Yung-Chun Chang, Sheng-Jie Lin, Wentai Tang, Hongtong Zhang, Ilija Tavchioski, Senja Pollak, Shubo Tian, Jinfeng Zhang, Yulia Otmakhova, Antonio Jimeno Yepes, Hang Dong, Honghan Wu, Richard Dufour, Yanis Labrak, Niladri Chatterjee, Kushagri Tandon, Fréjus Laleye, Loïc Rakotoson, Emmanuele Chersoni, Jinghang Gu, Annemarie Friedrich, Subhash Chandra Pujari, Mariia Chizhikova, Naveen Sivadasan, Zhiyong Lu
To close the gap, we organized the BioCreative LitCovid track to call for a community effort to tackle automated topic annotation for COVID-19 literature.
1 code implementation • 21 Mar 2022 • Hang Dong, Matúš Falis, William Whiteley, Beatrice Alex, Joshua Matterson, Shaoxiong Ji, Jiaoyan Chen, Honghan Wu
Knowledge-based methods that represent and reason the standard, explainable process of a task may need to be incorporated into deep learning-based methods for clinical coding.
no code implementations • 8 Jan 2022 • Shaoxiong Ji, Wei Sun, Xiaobo Li, Hang Dong, Ara Taalas, Yijia Zhang, Honghan Wu, Esa Pitkänen, Pekka Marttinen
Automated medical coding, an essential task for healthcare operation and delivery, makes unstructured data manageable by predicting medical codes from clinical documents.
1 code implementation • 5 May 2021 • Hang Dong, Víctor Suárez-Paniagua, Huayu Zhang, Minhong Wang, Emma Whitfield, Honghan Wu
The identification of rare diseases from clinical notes with Natural Language Processing (NLP) is challenging due to the few cases available for machine learning and the need of data annotation from clinical experts.
no code implementations • 18 Feb 2021 • Arlene Casey, Emma Davidson, Michael Poon, Hang Dong, Daniel Duma, Andreas Grivas, Claire Grover, Víctor Suárez-Paniagua, Richard Tobin, William Whiteley, Honghan Wu, Beatrice Alex
Understanding recent developments in NLP application to radiology is of significance but recent reviews on this are limited.
1 code implementation • 18 Nov 2020 • Zina M Ibrahim, Daniel Bean, Thomas Searle, Honghan Wu, Anthony Shek, Zeljko Kraljevic, James Galloway, Sam Norton, James T Teo, Richard JB Dobson
The ability to perform accurate prognosis of patients is crucial for proactive clinical decision making, informed resource management and personalised care.
2 code implementations • 29 Oct 2020 • Hang Dong, Víctor Suárez-Paniagua, William Whiteley, Honghan Wu
LE initialisation consistently boosted most deep learning models for automated medical coding.
Ranked #1 on Multi-Label Text Classification on MIMIC-III
no code implementations • 3 Apr 2020 • Zina Ibrahim, Honghan Wu, Richard Dobson
Many areas of research are characterised by the deluge of large-scale highly-dimensional time-series data.
no code implementations • 7 Feb 2020 • Rebecca Bendayan, Honghan Wu, Zeljko Kraljevic, Robert Stewart, Tom Searle, Jaya Chaturvedi, Jayati Das-Munshi, Zina Ibrahim, Aurelie Mascio, Angus Roberts, Daniel Bean, Richard Dobson
Multimorbidity research in mental health services requires data from physical health conditions which is traditionally limited in mental health care electronic health records.
1 code implementation • 2 Dec 2019 • Zina Ibrahim, Honghan Wu, Ahmed Hamoud, Lukas Stappen, Richard Dobson, Andrea Agarossi
Current machine learning models aiming to predict sepsis from Electronic Health Records (EHR) do not account for the heterogeneity of the condition, despite its emerging importance in prognosis and treatment.
no code implementations • 10 Mar 2019 • Honghan Wu, Karen Hodgson, Sue Dyson, Katherine I. Morley, Zina M. Ibrahim, Ehtesham Iqbal, Robert Stewart, Richard JB Dobson, Cathie Sudlow
Reusing NLP models in new settings, however, remains cumbersome - requiring validation and/or retraining on new data iteratively to achieve convergent results.
no code implementations • 10 Mar 2019 • Philip John Gorinski, Honghan Wu, Claire Grover, Richard Tobin, Conn Talbot, Heather Whalley, Cathie Sudlow, William Whiteley, Beatrice Alex
This work investigates multiple approaches to Named Entity Recognition (NER) for text in Electronic Health Record (EHR) data.