Discovering Novel Biological Traits From Images Using Phylogeny-Guided Neural Networks

1 code implementation • 5 Jun 2023 • Mohannad Elhamod, Mridul Khurana, Harish Babu Manogaran, Josef C. Uyeda, Meghan A. Balk, Wasila Dahdul, Yasin Bakış, Henry L. Bart Jr., Paula M. Mabee, Hilmar Lapp, James P. Balhoff, Caleb Charpentier, David Carlyn, Wei-Lun Chao, Charles V. Stewart, Daniel I. Rubenstein, Tanya Berger-Wolf, Anuj Karpatne

Discovering evolutionary traits that are heritable across species on the tree of life (also referred to as a phylogenetic tree) is of great interest to biologists to understand how organisms diversify and evolve.

Image Generation

Toward a Flexible Metadata Pipeline for Fish Specimen Images

no code implementations • 18 Nov 2022 • Dom Jebbia, Xiaojun Wang, Yasin Bakis, Henry L. Bart Jr., Jane Greenberg

This paper reports on an initiative targeting the development of a flexible metadata pipeline for a collection containing over 300, 000 digital fish specimen images, harvested from multiple data repositories and fish collections.