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Found 2 papers, 1 papers with code
Reads2Vec: Efficient Embedding of Raw High-Throughput Sequencing Reads Data
As a result, new methods such as Pangolin, which can scale to the millions of samples of SARS-CoV-2 currently available, have appeared.
Computing the BWT and LCP array of a Set of Strings in External Memory
Indexing very large collections of strings, such as those produced by the widespread next generation sequencing technologies, heavily relies on multi-string generalization of the Burrows-Wheeler Transform (BWT): recent developments in this field have resulted in external memory algorithms, motivated by the large requirements of in-memory approaches.
Data Structures and Algorithms
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