Search Results for author: Dejun Jiang

Found 4 papers, 1 papers with code

Deep Lead Optimization: Leveraging Generative AI for Structural Modification

no code implementations30 Apr 2024 Odin Zhang, Haitao Lin, HUI ZHANG, Huifeng Zhao, Yufei Huang, Yuansheng Huang, Dejun Jiang, Chang-Yu Hsieh, Peichen Pan, Tingjun Hou

Through this lens, de novo design can incorporate strategies from lead optimization to address the challenge of generating hard-to-synthesize molecules; inversely, lead optimization can benefit from the innovations in de novo design by approaching it as a task of generating molecules conditioned on certain substructures.

PPFlow: Target-aware Peptide Design with Torsional Flow Matching

no code implementations5 Mar 2024 Haitao Lin, Odin Zhang, Huifeng Zhao, Dejun Jiang, Lirong Wu, Zicheng Liu, Yufei Huang, Stan Z. Li

Therapeutic peptides have proven to have great pharmaceutical value and potential in recent decades.

Infinite Physical Monkey: Do Deep Learning Methods Really Perform Better in Conformation Generation?

no code implementations8 Mar 2023 Haotian Zhang, Jintu Zhang, Huifeng Zhao, Dejun Jiang, Yafeng Deng

Recently, with the development of geometric neural networks, the data-driven schemes have been successfully applied in this field, both for molecular conformation generation (in vacuum) and binding pose generation (in protein pocket).

Drug Discovery Molecular Docking +1

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