LLM-Based Section Identifiers Excel on Open Source but Stumble in Real World Applications

25 Apr 2024  Â·  Saranya Krishnamoorthy, Ayush Singh, Shabnam Tafreshi ·

Electronic health records (EHR) even though a boon for healthcare practitioners, are growing convoluted and longer every day. Sifting around these lengthy EHRs is taxing and becomes a cumbersome part of physician-patient interaction. Several approaches have been proposed to help alleviate this prevalent issue either via summarization or sectioning, however, only a few approaches have truly been helpful in the past. With the rise of automated methods, machine learning (ML) has shown promise in solving the task of identifying relevant sections in EHR. However, most ML methods rely on labeled data which is difficult to get in healthcare. Large language models (LLMs) on the other hand, have performed impressive feats in natural language processing (NLP), that too in a zero-shot manner, i.e. without any labeled data. To that end, we propose using LLMs to identify relevant section headers. We find that GPT-4 can effectively solve the task on both zero and few-shot settings as well as segment dramatically better than state-of-the-art methods. Additionally, we also annotate a much harder real world dataset and find that GPT-4 struggles to perform well, alluding to further research and harder benchmarks.

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Results from the Paper


Task Dataset Model Metric Name Metric Value Global Rank Result Benchmark
Classification MedSecId GPT-4 1 shot Micro-F1 96.86 # 1
Clinical Section Identification MedSecId GPT-4 1 shot Micro-F1 96.24 # 1

Methods