Internet security and privacy stand on the trustworthiness of public certificates signed by Certificate Authorities (CAs). However, software products do not trust the same CAs and therefore maintain different root stores, each typically containing hundreds of trusted roots capable of issuing "trusted" certificates for any domain... Incidents with misissued certificates motivated Google to implement and enforce Certificate Transparency (CT). CT logs archive certificates in a public, auditable and append-only manner. The adoption of CT changed the trust landscape, with logs too maintaining their own root lists and only logging certificates that chain back to one of their roots. In this paper, we present a first characterization of this emerging CT root store landscape, as well as the tool that we developed for data collection, visualization, and analysis of the root stores. As part of our characterization, we compare the logs' root stores and quantify their changes with respect to both each other and the root stores of major software vendors, look at evolving vendor CT policies, and show that root store mismanagement may be linked to log misbehavior. Finally, we present and discuss the results of a survey that we have sent to the log operators participating in Apple's and Google's CT log programs. (read more)