CellProfiler plugins -- an easy image analysis platform integration for containers and Python tools

2 Jun 2023  ·  Erin Weisbart, Callum Tromans-Coia, Barbara Diaz-Rohrer, David R Stirling, Fernanda Garcia-Fossa, Rebecca A Senft, Mark C Hiner, Marcelo B de Jesus, Kevin W Eliceiri, Beth A Cimini ·

CellProfiler is a widely used software for creating reproducible, reusable image analysis workflows without needing to code. In addition to the >90 modules that make up the main CellProfiler program, CellProfiler has a plugins system that allows for the creation of new modules which integrate with other Python tools or tools that are packaged in software containers. The CellProfiler-plugins repository contains a number of these CellProfiler modules, especially modules that are experimental and/or dependency-heavy. Here, we present an upgraded CellProfiler-plugins repository, an example of accessing containerized tools, improved documentation, and added citation/reference tools to facilitate the use and contribution of the community.

PDF Abstract

Code
Add Remove Mark official

No code implementations yet. Submit your code now

Tasks
Add Remove

Datasets

  Add Datasets introduced or used in this paper

Results from the Paper
Add Remove

  Submit results from this paper to get state-of-the-art GitHub badges and help the community compare results to other papers.

Methods
Add Remove

No methods listed for this paper. Add relevant methods here
Contact us on: hello@paperswithcode.com . Papers With Code is a free resource with all data licensed under CC-BY-SA.
Terms Data policy Cookies policy