Brain Modelling as a Service: The Virtual Brain on EBRAINS

11 Feb 2021 Michael Schirner Lia Domide Dionysios Perdikis Paul Triebkorn Leon Stefanovski Roopa Pai Paula Popa Bogdan Valean Jessica Palmer Chloê Langford André Blickensdörfer Michiel van der Vlag Sandra Diaz-Pier Alexander Peyser Wouter Klijn Dirk Pleiter Anne Nahm Oliver Schmid Marmaduke Woodman Lyuba Zehl Jan Fousek Spase Petkoski Lionel Kusch Meysam Hashemi Daniele Marinazzo Jean-François Mangin Agnes Flöel Simisola Akintoye Bernd Carsten Stahl Michael Cepic Emily Johnson Gustavo Deco Anthony R. McIntosh Claus C. Hilgetag Marc Morgan Bernd Schuller Alex Upton Colin McMurtrie Timo Dickscheid Jan G. Bjaalie Katrin Amunts Jochen Mersmann Viktor Jirsa Petra Ritter

The Virtual Brain (TVB) is now available as open-source cloud ecosystem on EBRAINS, a shared digital research platform for brain science. It offers services for constructing, simulating and analysing brain network models (BNMs) including the TVB network simulator; magnetic resonance imaging (MRI) processing pipelines to extract structural and functional connectomes; multiscale co-simulation of spiking and large-scale networks; a domain specific language for automatic high-performance code generation from user-specified models; simulation-ready BNMs of patients and healthy volunteers; Bayesian inference of epilepsy spread; data and code for mouse brain simulation; and extensive educational material... (read more)

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  • COMPUTATIONAL ENGINEERING, FINANCE, AND SCIENCE
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  • QUANTITATIVE METHODS